Synthetic data: COVID-19 example allele frequencies for Estonia, Latvia and Finland (GRCh38)

Synthetic allele frequencies for one variant (chromosome 3, position 45823240, T>C, GRCh38) in a simulated cohort of 4,000 people from Estonia, Latvia and Finland, given in total and by country and sex. The data comes from the GDI starter kit's synthetic COVID-19 example, made in the shape of a Genome of Europe allele-frequency export; it describes no real person. It is published to show and test allele-frequency search in the GDI User Portal and the GDI Estonia Beacon.

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Title Synthetic data: COVID-19 example allele frequencies for Estonia, Latvia and Finland (GRCh38)
Description

Synthetic allele frequencies for one variant (chromosome 3, position 45823240, T>C, GRCh38) in a simulated cohort of 4,000 people from Estonia, Latvia and Finland, given in total and by country and sex. The data comes from the GDI starter kit's synthetic COVID-19 example, made in the shape of a Genome of Europe allele-frequency export; it describes no real person. It is published to show and test allele-frequency search in the GDI User Portal and the GDI Estonia Beacon.
Keywords
Contact points
Contact point 1
URI
Name
GDI Estonia
Name (translations)
Email
gdi@ut.ee
Identifier
URL
  1. https://gdi.ut.ee/
Publisher
Publisher 1
URI
Name
GDI Estonia
Name (translations)
Email
gdi@ut.ee
URL
https://gdi-dev.ut.ee/
Type
Publisher note
Publisher type
Identifier
[]
Country
[]
Creator
Creator 1
URI
Name
Genomic Data Infrastructure (GDI) project
Name (translations)
Email
URL
Type
Publisher note
Publisher type
Identifier
[]
Country
[]
Landing page
Release date 2026-10-07T09:42:18+00:00
Modification date 2026-10-30T12:31:54+00:00
In Series
    Version
    Version notes
    Dataset status
    Identifier GDI-EE-UTARTU-20261007082040920
    Frequency
    Provenance

    Synthetic sites-only VCF from the GDI starter kit (example Genome of Europe data, COVID.monogneic.aggregate.AFs.GRCh38.vcf) with allele counts, allele numbers and frequencies per country and sex. Nothing was sequenced; converted to allele-frequency tables with gdi-dataset-tool.
    Type https://publications.europa.eu/resource/authority/dataset-type/SYNTHETIC_DATA
    Temporal coverage
    Temporal resolution
    Spatial coverage
    Spatial resolution in meters
    Access rights http://publications.europa.eu/resource/authority/access-right/PUBLIC
    Other identifier
    Theme
    1. http://publications.europa.eu/resource/authority/data-theme/HEAL
    Language
    1. http://publications.europa.eu/resource/authority/language/ENG
    Documentation
    Conforms to
    1. http://data.gdi.eu/core/p2/ExternallyGoverned
    Is referenced by
    Distribution
    1. https://gdi-dev.ut.ee/fairdp/distribution/GDI-EE-UTARTU-20261007082040920
    Sample
    Analytics
    Applicable legislation
    1. http://data.europa.eu/eli/reg/2025/327/oj
    Has version
    Code values
    Coding system
    Purpose
    Health category
    1. http://data.gdi.eu/core/p2/HealthCategoryHumanGenomic
    Health theme
    1. https://hdeu-dcat.data.health.europa.eu/resource/authority/health-theme/HEALTH_PRODUCTS
    2. https://hdeu-dcat.data.health.europa.eu/resource/authority/health-theme/RESPIRATORY_DISEASES
    Legal basis
    Minimum typical age 18
    Maximum typical age 90
    Number of records 1
    Number of records for unique individuals. 4000
    Personal data
    Publisher note
    Publisher type
    Trusted Data Holder
    Population coverage
    Retention period
    Health data access body
    Health data access body 1
    URI
    Name
    Genomic Data Access Body in Estonia
    Name (translations)
    Email
    gdi@ut.ee
    URL
    Type
    Identifier
    []
    Country
    []
    Qualified relation
    Was generated by
    Qualified attribution
    Quality annotations
    URI https://gdi-dev.ut.ee/fairdp/dataset/GDI-EE-UTARTU-20261007082040920